Write a script which can calculate the degree and clustering coefficient for every node (protein) in the human protein interaction network (attached). Now calculate the average clustering coefficient...

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Write a script which can calculate the degree and clustering coefficient for every node (protein) in the human protein interaction network (attached). Now calculate the average clustering coefficient of the network. Finally, test whether the network has a scale-free structure by plotting the degree distribution ?• Now write another script that can calculate the shortest path lengths between every pair of nodes (proteins) in the attached files (two files are attached). Compare the path length distributions between the two protein sets using a wilcox test.
(I want only the pyhton code separately)


OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B 1810055G02RikMPRIP 1810055G02RikRAI14 1810055G02RikTPM1 2810046L04RikARF1 2810046L04RikARF3 4922501C03RikCPNE4 4930572J05RikC8orf55 4930572J05RikPRKDC 4930572J05RikSPRR2B 4930572J05RikSPRR2D 4930572J05RikSPRR2E 4930572J05RikSPRR2G 9830001H06RikC1QBP 9830001H06RikCCDC165 9830001H06RikDYNLL1 9830001H06RikKIAA0889 9830001H06RikPPP2CA 9830001H06RikPPP2R1A 9830001H06RikPPP2R5A 9830001H06RikPPP2R5E 9830001H06RikRNF41 A1CFAPOBEC1 A1CFKHSRP A1CFSYNCRIP A2MADAMTS1 A2MAPOE A2MIL10 A2MIL4 A2MLCAT A2MLEP A2MNGF A2MPAEP AAGABEIF3C AATFCHEK2 AATFMAGED1 AATFMAPT AATFPAWR AATFPCBD2 AATFRB1 AATFRBL1 AATFRBL2 AATFRELA AATFTsg101 ABCA1AOX1 ABCA1APOA1 ABCA1CDC42 ABCA1COPS5 ABCA1CREBBP ABCA1FADD ABCA1FLOT1 ABCA1HGS ABCA1PRPF8 ABCA1SDHB ABCA1SNTB2 ABCA1STX12 ABCA1UBC ABCA1UGP1 ABCA1XPC ABCA13APOA1 ABCA13APOA2 ABCA2CDK5RAP2 ABCA4CNGB1 ABCB1DHX9 ABCB1PIM1 ABCB1UBC ABCB7FECH ABCC2PDZD3 ABCC2Rdx ABCC2SLC9A3R1 ABCC8KCNJ11 ABCC8RAPGEF4 ABCD1ABCD2 ABCD3ABCD1 ABCD3PEX19 ABCD4PEA15 ABCD4XRCC6 ABCE1RNASEL ABCE1UBASH3A ABCF3ACIN1 ABCF3DNALI1 ABCF3LAMTOR1 ABCF3TOE1 ABCG1UBC ABCG5ABCG8 ABHD16AATP5G3 ABHD16ADNAJC1 ABHD16AGPRC5C ABHD16AHM13 ABHD16AIFITM1 ABHD16ARNF5 ABHD16ASAFB ABHD16ASPAG7 ABHD16ATMEM147 ABHD16ATMEM222 ABI1ABL1 ABI1ENAH ABI1EPS8 ABI1NCK1 ABI2ABL1 ABI2CCDC53 ABI2IFT20 ABI2KRT20 ABI2TRIM32 ABI2UBC ABI3ABI3BP ABI3CEP170P1 ABI3CEP44 ABI3DTNBP1 ABI3PAK1 ABI3PAK2 ABL1ABI1 ABL1ABI2 ABL1ABL1 ABL1ABL2 ABL1ATM ABL1ATR ABL1BAG1 ABL1BCAR1 ABL1BCR ABL1BRCA1 ABL1CAT ABL1CBL ABL1CREB1 ABL1CRKL ABL1Creb1 ABL1DOK1 ABL1EPHA3 ABL1EPHB2 ABL1EVL ABL1GPX1 ABL1GRB10 ABL1GRB2 ABL1HCK ABL1HSP90AA1 ABL1HSPA4 ABL1INPPL1 ABL1JAK1 ABL1Jak1 ABL1MDM2 ABL1MICAL1 ABL1MTOR ABL1NCK1 ABL1NCOA3 ABL1NEDD9 ABL1NFKBIA ABL1NTRK1 ABL1PAG1 ABL1PARK2 ABL1PCNA ABL1PIK3R1 ABL1PLCG1 ABL1PRKDC ABL1PSMA4 ABL1PSMA7 ABL1PTPN6 ABL1RAD51 ABL1RAD9A ABL1RB1 ABL1RFX1 ABL1RYBP ABL1SHC1 ABL1SHD ABL1SHE ABL1SORBS2 ABL1SPTA1 ABL1SPTAN1 ABL1SRC ABL1STK4 ABL1STUB1 ABL1TERF1 ABL1TOPBP1 ABL1TP53 ABL1TP73 ABL1TUB ABL1UBC ABL1VAV1 ABL1WRNIP1 ABL1YTHDC1 ABL1ZDHHC16 ABL2ABL1 ABL2CAT ABL2PSMA7 ABL2SORBS2 ABLIM1BEGAIN ABLIM1CALCOCO2 ABLIM1HOOK2 ABLIM1LDOC1 ABLIM1TRAF2 ABLIM1TSC22D4 ABLIM1USHBP1 ABLIM1VIM ABLIM3ACTC1 ABTB1DNTTIP1 ABTB2CUL3 ABTB2DNTT ABTB2EEF1A1 ABTB2RBX1 ABTB2UBC ACACABRCA1 ACACACHGB ACADVLACADVL ACANFBLN2 ACAP1IFFO1 ACCN1ACCN3 ACCN1Pick1 ACCN2PICK1 ACCN3DLG4 ACCN3GOPC ACCN3LIN7B ACCN3MAGI1 ACCSACCS ACCSFBF1 ACDPOT1 ACDTERF1 ACDTERF2 ACDTINF2 ACDXRCC6 ACHECOL1A1 ACIN1RNPS1 ACIN1SAP18 ACO1FBXL5 ACO1UBC ACP1EPHA2 ACP1FNBP1L ACP1MRPL20 ACP1SFMBT1 ACP5C2orf18 ACP6C2orf18 ACP6DHCR7 ACP6DHX36 ACP6ERH ACP6GNG7 ACP6ILK ACP6LIMS1 ACP6RGS10 ACP6RSU1 ACPPACPP ACSM3EHMT2 ACTA1CCT4 ACTA1CCT5 ACTA1CFL1 ACTA1DHX9 ACTA1DMD ACTA1DNASE1 ACTA1ERD10 ACTA1GC ACTA1HDAC4 ACTA1HDAC8 ACTA1NRAP ACTA1PCYT1B ACTA1RPS6KB1 ACTA1TMSB4X ACTA1TMSB4Y ACTA1TRIP6 ACTA2CCT4 ACTA2CCT5 ACTA2PCYT1B ACTBACTB ACTBACTG1 ACTBACTR2 ACTBACTR3 ACTBCCT2 ACTBCCT5 ACTBCFL1 ACTBCFL2 ACTBCTGF ACTBCct3 ACTBCct4 ACTBCct5 ACTBCct6a ACTBCct7 ACTBCct8 ACTBDHX9 ACTBDSTN ACTBESR1 ACTBHMMR ACTBHNRNPU ACTBHspa1b ACTBNCALD ACTBNCF1 ACTBNCF2 ACTBPCYT1B ACTBPOLR2A ACTBPcyt1a ACTBPcyt1b ACTBRAC1 ACTBRAC2 ACTBSSH1 ACTBSSH2 ACTBTAF11 ACTC1PDCD6IP ACTC1SYNE2 ACTG1ACTG1 ACTG1CFL1 ACTG1CFL2 ACTG1DSTN ACTG1PFN2 ACTG1SH3GL2 ACTG1TMSB4X ACTL6AEWSR1 ACTL6AFLII ACTL6AKAT2A ACTL6AKAT5 ACTL6ARUVBL1 ACTL6ATP53 ACTL6ATRRAP ACTL6AYY1 ACTL6BCTBP1 ACTN1ACTN1 ACTN1CDK5R2 ACTN1CTNNA1 ACTN1DAG1 ACTN1MAGEA11 ACTN1MYOT ACTN1MYOZ1 ACTN1PDLIM1 ACTN1PKN1 ACTN1PYGB ACTN1SSX2IP ACTN1TTN ACTN1TUBA1A ACTN1XRCC4 ACTN1ZYX ACTN2ACTN3 ACTN2ADAM12 ACTN2DLG1 ACTN2GRIN2B ACTN2KCNA5 ACTN2MYOZ1 ACTN2MYPN ACTN2PDLIM1 ACTN2TNN ACTN2Tuba1a ACTN3ACTN2 ACTN4CAMK2A ACTN4CAMK2B ACTN4ESR1 ACTN4INO80 ACTN4Lrrc7 ACTN4MEF2A ACTN4MYOZ1 ACTN4MYOZ2 ACTN4PDLIM1 ACTN4VDR ACTR1ANUMA1 ACTR3ACTR2 ACTR3ARPC1B ACTR3ARPC2 ACTR3ARPC3 ACTR3ARPC4 ACTR3CTTN ACTR3BACTR2 ACTR3BARPC1A ACTR3BARPC1B ACTR3BARPC2 ACTR3BARPC3 ACTR3BARPC3P1 ACTR3BARPC4 ACTR3BARPC5 ACTR3BARPC5L ACTR3BCDK4 ACTR3BKIAA1967 ACTR3BTWF2 ACTR5ACTL6A ACTR5ACTR8 ACTR5INO80 ACTR5INO80B ACTR5INO80C ACTR5INO80D ACTR5INO80E ACTR5MCRS1 ACTR5NFRKB ACTR5RUVBL1 ACTR5RUVBL2 ACTR5TFPT ACTR5UCHL5 ACTR5YY1 ACTR8ACTL6A ACTR8ACTR5 ACTR8INO80 ACTR8INO80B ACTR8INO80C ACTR8INO80D ACTR8INO80E ACTR8MCRS1 ACTR8NFRKB ACTR8RUVBL1 ACTR8RUVBL2 ACTR8TFPT ACTR8UCHL5 ACTR8YY1 ACVR1Ap2b1 ACVR1BMPR2 ACVR1Cdk14 ACVR1Chn1 ACVR1FNTA ACVR1Fancl ACVR1Fbxo3 ACVR1Fcho1 ACVR1Fgd6 ACVR1Fkbp4 ACVR1GDF5 ACVR1IGSF1 ACVR1Ikbkb ACVR1Ilkap ACVR1Jub ACVR1Naa20 ACVR1Nkiras1 ACVR1Nras ACVR1Nuak2 ACVR1Plek ACVR1Plekhb1 ACVR1Rab17 ACVR1Rab33b ACVR1Rab3b ACVR1Rab6b ACVR1Rap2a ACVR1Rasd2 ACVR1Rhebl1 ACVR1Rhobtb1 ACVR1Rhod ACVR1Rhoj ACVR1Rps27a ACVR1Rras2 ACVR1SMAD1 ACVR1SMAD5 ACVR1SMURF1 ACVR1Sqstm1 ACVR1Stat1 ACVR1Stx8 ACVR1TSC22D1 ACVR1Tgfbr1 ACVR1Ube2e3 ACVR1Ube2r2 ACVR1Uhmk1 ACVR1Usp21 ACVR1Usp39 ACVR1Wdr61 ACVR1BACVR1 ACVR1BACVR2A ACVR1BFKBP1A ACVR1BIGSF1 ACVR1BNEDD4L ACVR1BSMAD2 ACVR1BSMAD3 ACVR1BSMAD7 ACVR1BSMURF1 ACVR1BTSC22D1 ACVR1BUBC ACVR2ABMP6 ACVR2AGDF5 ACVR2AIGSF1 ACVR2AINHA ACVR2AINHBA ACVR2AMAGI2 ACVR2ASYNJ2BP ACVR2BACVR1B ACVR2BBMP6 ACVR2BGDF5 ACVR2BIGSF1 ACVR2BMSTN ACVRL1IGSF1 ACVRL1TGFB1 ACVRL1TSC22D1 ACY1ACY1 ACY1TTC1 ADAADORA1 ADAADORA2A ADADRD1 ADANR3C1 ADAM10GRB2 ADAM10LCK ADAM10MAD2L1 ADAM11STC2 ADAM12IGFBP3 ADAM12IGFBP5 ADAM12PIK3R1 ADAM15GRB2 ADAM15HCK ADAM15LCK ADAM15MAD2L1 ADAM15SH3GL2 ADAM15SNX9 ADAM15TRIP13 ADAM17DLG1 ADAM17MAD2L1 ADAM17MAPK1 ADAM19ABI2 ADAM19COPB1 ADAM2CRYAB ADAM2DNM1 ADAM22DLG4 ADAM22LGI1 ADAM9MAD2L2 ADAM9PRKCD ADAM9SH3GL2 ADAM9SNX9 ADAMTS1VEGFA ADAMTSL4CATSPER1 ADAMTSL4DLK2 ADAMTSL4KRTAP4-12 ADAMTSL4NTN4 ADAP1ANP32A ADAP1CSNK1A1 ADAP1NCL ADAP1PIK3CA ADAP1PRKCI ADAP1PRKCZ ADAP1PRKD1 ADAP2EEF1G ADARXPO1 ADARB1PIN1 ADARB1WWP2 ADCY2ADCY5 ADCY5ADCY5 ADCY5Mycbp2 ADCY5RGS2 ADCY6CHRNA7 ADCYAP1CPAMD8 ADCYAP1SCTR ADD1CALM1 ADD1HDAC1 ADD1ID2 ADD1ID3 ADD1SIN3A ADD1SMARCA2 ADD1SMARCA4 ADD1SMARCC1 ADD1SPTAN1 ADD1SPTB ADH5ADH5 ADH5CHD3 ADH7ADH7 ADI1DBT ADNPARID1A ADNPSMARCA4 ADNPSMARCC2 ADORA1DRD1 ADORA1GNAI2 ADORA2AADORA2A ADORA2AActn1 ADORA2AActn2 ADORA2AActn3 ADORA2AActn4 ADORA2ADRD2 ADRA1BAP2M1 ADRA2BEIF2B1 ADRA2CEIF2B1 ADRB1ARRB1 ADRB1GIPC1 ADRB2ADRB2 ADRB2ADRBK1 ADRB2AKAP12 ADRB2ARRDC3 ADRB2Arrb2 ADRB2CAV3 ADRB2CUL2 ADRB2EGLN3 ADRB2EIF2B1 ADRB2GRB2 ADRB2NEDD4 ADRB2OPRD1 ADRB2PPP3CA ADRB2SLC9A3R1 ADRB2SLC9A3R2 ADRB2SRC ADRB2TCEB1 ADRB2UBC ADRB2VHL ADRB3SRC ADRBK1FSHR ADRBK1GNA15 ADRBK1GNAQ ADRBK1HDAC6 ADRBK1PDC ADRBK1PDCL ADRBK1PDE6G ADRBK1PRKCB ADRBK1RHO ADRBK1SNCA ADRBK1SNCB ADRBK1SNCG ADRBK1SRC ADRBK2CXCR4 ADRBK2UBC ADRM1ATP6V0D2 ADRM1PSMC5 ADRM1PSMD1 ADRM1PSMD2 ADRM1PSMD4 ADRM1UBC ADRM1UCHL5 AEBP2RALYL AEBP2SUZ12 AESAES AESAR AESGTF2E1 AESHMGB1 AESHNF1A AESHNRNPAB AESMED31 AESPTRH2 AESRELA AESSH3GL3 AESTLE1 AESTLE3 AFAP1ACTC1 AFAP1AFAP1 AFAP1PRKCA AFAP1PRKCB AFAP1PRKCD AFAP1PRKCE AFAP1PRKCG AFF1AFF1 AFF1AFF4 AFF1BRD4 AFF1CCNT1 AFF1CDK9 AFF1DDX6 AFF1DOT1L AFF1HEXIM1 AFF1HIST3H3 AFF1MLL AFF1MLLT1 AFF1MLLT10 AFF1MLLT3 AFF1NPM1 AFF1NT5E AFF1PCSK1 AFF1POLR2A AFF1RELA AFF4AFF1 AFF4CCNT1 AFF4CDK9 AFF4ELL2 AFF4MLL AFF4MLLT1 AFF4MLLT3 AFPCCR5 AGAAGA AGAP2EPB41L1 AGAP2PIK3R1 AGFG1EPS15 AGFG2EPS15 AGLUBC AGPSGNPAT AGR2BRD7 AGR2CCDC90B AGR2CRMP1 AGR2DAG1 AGR2LYPD3 AGR2MED31 AGR3DAG1 AGR3LYPD3 AGRPMC4R AGTEWSR1 AGTR1ADRBK1 AGTR1AGTRAP AGTR1ARRB2 AGTR1BDKRB2 AGTR1GRK5 AGTR1MAPK1 AGTR1TRAF3 AGTR1ZBTB16 AGTR2AGTRAP AGTR2MTUS1 AGTRAPAGTRAP AGTRAPGNB2L1 AGXT2L2AGXT2L2 AHRAIP AHRARNT AHRCCNT1 AHRCTNNB1 AHRESR1 AHRFOXA1 AHRGTF2F1 AHRGTF2F2 AHRHSP90AA1 AHRNCOA2 AHRNEDD8 AHRNR2F1 AHRNRIP1 AHRRB1 AHRRELA AHRSMARCA4 AHRSRC AHRTBP AHRRANKRA2 AHRRESR1 AHRRHDAC4 AHRRHDAC5 AHSPZC3H12A AI837181AHNAK AI837181ANXA5 AI837181ARF1 AI837181ARF3 AI837181ASS1 AI837181C11orf68 AI837181CALR AI837181CANX AI837181CAPRIN1 AI837181CDK1 AI837181CSDE1 AI837181DDX39A AI837181DDX39B AI837181DDX5 AI837181DHX15 AI837181EIF4A1 AI837181EIF4A3 AI837181EIF4H AI837181FASN AI837181GNB2L1 AI837181GOT2 AI837181GPI AI837181HNRNPA3 AI837181HNRNPAB AI837181HNRNPK AI837181HNRNPR AI837181HNRNPU AI837181NACA AI837181NONO AI837181P4HB AI837181PA2G4 AI837181PABPC1 AI837181PDIA3 AI837181PDIA4 AI837181PDIA6 AI837181PFN1 AI837181PGK1 AI837181PHB AI837181PHB2 AI837181PHGDH AI837181PKM2 AI837181PPIA AI837181PPIB AI837181RAN AI837181RBMX AI837181RCN1 AI837181RUVBL2 AI837181SERBP1 AI837181SET AI837181SFPQ AI837181SRSF1 AI837181SRSF5 AI837181SRSF6 AI837181STRAP AI837181SYNCRIP AI837181TAGLN2 AI837181TFRC AI837181TKT AI837181TRAP1 AI837181UBA1 AI837181VCP AI837181VDAC1 AI837181XRCC6 AICDACTNNBL1 AICDAKPNA1 AICDAPRKDC AICDATUBB4B AIF1CASP10 AIF1CASP8 AIFM1HSPA1A AIFM1SETDB1 AIFM1STC2 AIFM1UBC AIFM1XIAP AIMP1PSMA7 AIMP1RARS AIMP1SMURF2 AIMP2ACTB AIMP2AIMP2 AIMP2C19orf57 AIMP2CEP170P1 AIMP2CHD3 AIMP2CNO AIMP2DARS AIMP2DARS2 AIMP2DEAF1 AIMP2DSN1 AIMP2FGB AIMP2HSPA4 AIMP2IARS AIMP2KARS AIMP2KDR AIMP2KIAA0947 AIMP2KIAA1377 AIMP2KLC2 AIMP2LMO3 AIMP2LNX1 AIMP2LUC7L2 AIMP2MATR3 AIMP2MCF2L AIMP2PARK2 AIMP2PPP2R1A AIMP2PSME1 AIMP2QARS AIMP2RARS AIMP2STUB1 AIMP2TP53 AIMP2TRMT2A AIMP2UBC AIMP2ZC3H12A AIPAHR AIPGNA13 AIPHSP90AA1 AIPSTIP1 AIPL1NUB1 AIREAIRE AIRECHD6 AIREDDX17 AIREDDX5 AIREEFTUD2 AIREGEMIN5 AIREHIST1H2AC AIREHIST1H2BO AIREHIST1H3A AIREHIST2H2BE AIREHSPA4 AIREHSPA5 AIREIPO7 AIREKPNB1 AIRELMNB1 AIREMCM2 AIREMCM5 AIREMCM6 AIREMSH2 AIREMSH6 AIREMYBBP1A AIRENASP AIRENOP56 AIRENUP93 AIREPABPC1 AIREPARP1 AIREPCNA AIREPOLR2A AIREPOLR2B AIREPRKDC AIRERAD21 AIRERANBP2 AIRERANBP9 AIRERUVBL2 AIRESMC1A AIRESMC3 AIRESNRPB AIRESNRPD3 AIRESRSF1 AIRESRSF2 AIRESRSF3 AIRESSRP1 AIRETOP2A AIRETRIM28 AIREXPO1 AIREXPOT AJAP1CDH1 AJAP1CTNNB1 AJUBAPRMT5 AJUBARARA AJUBARARG AJUBARXRG AJUBASLC1A2 AJUBASNAI1 AK1MLL3 AK4KEAP1 AKAP1AMY1A AKAP1C3orf15 AKAP1MYCBP AKAP1PRKAR1A AKAP1PRKAR1B AKAP1PRKAR2A AKAP11GSK3B AKAP11PPP1CA AKAP11PPP1CB AKAP11PPP1CC AKAP11PRKAR1A AKAP11PRKAR2A AKAP11PRKAR2B AKAP12HDAC7 AKAP12PRKAR2A AKAP12PRKCA AKAP13ESR1 AKAP13GNA12 AKAP13GNAQ AKAP13PPARA AKAP13RHOA AKAP13RXRB AKAP13THRA AKAP14PRKAR2A AKAP17ACCDC85B AKAP17ANINL AKAP2PRKAR2A AKAP3AKAP4 AKAP3PRKAR2A AKAP3ROPN1 AKAP3ROPN1L AKAP3SPA17 AKAP4AKAP3 AKAP4FSIP1 AKAP4FSIP2 AKAP4PRKAR1A AKAP4PRKAR2A AKAP5CALM1 AKAP5Dlg1 AKAP5Dlg4 AKAP5Gria1 AKAP5Grin2b AKAP5PPP3CA AKAP5PRKAR2B AKAP5PRKCA AKAP6PDE4A AKAP8AMY1A AKAP8CCND1 AKAP8CCND2 AKAP8CCND3 AKAP8DDX5 AKAP8MCM2 AKAP8PRKAR2A AKAP8LCDC6 AKAP8LEMD AKAP8LLBR AKAP8LRNF43 AKAP8LTMPO AKAP8LUBC AKAP9CALM1 AKAP9CALM2 AKAP9CCNE1 AKAP9CSNK1D AKAP9CSNK1E AKAP9FNBP1 AKAP9PKN1 AKAP9PRKAR2A AKAP9TRIP10 AKAP9TUBGCP3 AKIP1NEDD8 AKIP1PRKACA AKIP1RELA AKIP1SENP8 AKIP1SIRT1 AKIRIN2LNX1 AKR1A1EXOSC4 AKR1B10ACACA AKR1C2AKR1C2 AKR1C3LRIF1 AKR1C3UBE2W AKR1C3ZHX1 AKR7A2AKR7A3 AKR7A3AKR7A3 AKT1ACTA1 AKT1AKTIP AKT1APOH AKT1AR AKT1ARFIP2 AKT1ARHGAP29 AKT1ARRB2 AKT1ASXL1 AKT1Akt2 AKT1BAD AKT1BPGM AKT1BRAF AKT1BRCA1 AKT1CARHSP1 AKT1CDC37 AKT1CDKN1B AKT1CHEK1 AKT1CHN2 AKT1CHUK AKT1COMMD1 AKT1CREBBP AKT1DCTN1 AKT1DNAJB1 AKT1DNMT1 AKT1EEF1G AKT1EP300 AKT1ERBB3 AKT1ESR1 AKT1EZH2 AKT1FANCA AKT1FOXO1 AKT1GAB2 AKT1GSK3A AKT1GSK3B AKT1HSP90AA1 AKT1HSP90AB1 AKT1HSPA4 AKT1HSPB1 AKT1IKBKB AKT1ILK AKT1IMPDH2 AKT1IRAK1 AKT1KRT10 AKT1KTN1 AKT1MAP2K4 AKT1MAP3K8 AKT1MAPK14 AKT1MAPK8IP1 AKT1MAPKAPK2 AKT1MARK2 AKT1MDM2 AKT1MTCP1 AKT1MTOR AKT1MXD1 AKT1NCOA4 AKT1NCOR2 AKT1NF2 AKT1NOTCH1 AKT1NPM1 AKT1NR4A1 AKT1PA2G4 AKT1PAK1 AKT1PAK6 AKT1PDPK1 AKT1PI4K2B AKT1PIAS1 AKT1PIAS2 AKT1PKN2 AKT1PPA1 AKT1PPL AKT1PPP2CA AKT1RAF1 AKT1SETDB1 AKT1SKP2 AKT1SMARCB1 AKT1SMARCC1 AKT1SMARCC2 AKT1STUB1 AKT1TCL1A AKT1TCL1B AKT1TERT AKT1TRIB3 AKT1TRIM13 AKT1TSC1 AKT1TSC2 AKT1TTC3 AKT1UBC AKT1XIAP AKT1YWHAZ AKT1ZHX1 AKT2APPL1 AKT2CHEK1 AKT2CHUK AKT2ESR1 AKT2MTCP1 AKT2SETDB1 AKT2SH3RF1 AKT2TCL1A AKT2TCL1B AKT2TTC3 AKT2XIAP AKT3PRKCZ AKT3TTC3 AKTIPAKT1 AKTIPASS1 AKTIPC10orf2 AKTIPDCTN1 AKTIPDZIP3 AKTIPEXOC7 AKTIPGTF3C1 AKTIPHDLBP AKTIPHOOK1 AKTIPIARS AKTIPIMMT AKTIPKIAA1377 AKTIPMARCH5 AKTIPPDS5A AKTIPPOLA2 AKTIPRPA1 AKTIPTIMM50 AKTIPTRIM23 AKTIPTRIM41 AKTIPUTP14A ALAS2SUCLA2 ALBFCGRT ALBLUC7L2 ALCAMCD6 ALDH1A1ALDH1A1 ALDH2C14orf1 ALDH2C2orf18 ALDH2CRMP1 ALDH2HSPD1 ALDH2HSPE1 ALDH2IGSF21 ALDH2UNC119 ALG10BKCNH2 ALG2ALG2 ALG2ANXA11 ALG2ANXA7 ALG2HSP90AA1 ALG2LAMP1 ALG2PDCD6IP ALG2SEC31A ALG2TSG101 ALG2VPS28 ALG2VPS37A ALKCDK13 ALKCENPF ALKDYT10 ALKEIF4B ALKEPHA1 ALKEPHB2 ALKGAK ALKGRB2 ALKHSPD1 ALKIRF7 ALKIRS4 ALKJAK2 ALKJAK3 ALKKRT18 ALKKRT74 ALKMAP2K7 ALKMAP3K1 ALKMAP3K4 ALKMAP3K5 ALKMAPK1 ALKMAPK8IP3 ALKMEP1B ALKMTIF2 ALKMYBPC3 ALKMYLK ALKPDX1 ALKPIK3CB ALKPLCB2 ALKPLCG1 ALKPTN ALKRAB35 ALKRAD17 ALKSHC1 ALKSHC3 ALKSMC6 ALKSOCS1 ALKSOCS5 ALKSTAT3 ALKUBASH3A ALKZC3HC1 ALKBH1DNAJB6 ALL1CHD3 ALL1HDAC1 ALL1HDAC2 ALL1HIST1H3A ALL1MBD3 ALL1RAN ALL1RBBP4 ALL1RBBP7 ALL1SAP30 ALL1SIN3A ALL1SMARCA2 ALL1SMARCB1 ALL1SMARCC1 ALL1SMARCC2 ALL1TAF1 ALL1TAF6 ALL1TAF9 ALL1TBP ALOX12ITGB4 ALOX12KRT5 ALOX12LMNA ALOX12TRIB1 ALOX5COTL1 ALOX5COTL1P1 ALOX5TGFBRAP1 ALPIAP3B1 ALPIIRF5 ALS2CLRAB5A ALX1IPO13 ALX4ALX4 AMBPA2M AMBPALB AMBPAMBP AMBPCD79A AMBPFN1 AMBRA1ATG3 AMBRA1ATG4B AMBRA1CUL4A AMBRA1CUL4B AMBRA1DDA1 AMBRA1DDB1 AMBRA1MAP1B AMBRA1PARK2 AMD1AMD1 AMFRAIFM1 AMFRAMFR AMFRATP2A2 AMFRATXN3 AMFRCANX AMFRCCDC47 AMFRCD3D AMFRCRMP1 AMFRCSE1L AMFRCYP2E1 AMFRCYP3A4 AMFRDERL1 AMFRDERL2 AMFRDERL3 AMFREEF1A1 AMFRERLIN1 AMFRERLIN2 AMFRFAF2 AMFRHAX1 AMFRHERPUD1 AMFRHMGCR AMFRHSP90B1 AMFRHSPA4 AMFRHSPA5 AMFRHSPD1 AMFRHTT AMFRINSIG1 AMFRKPNB1 AMFRPDIA2 AMFRRHOT1 AMFRRNF5 AMFRRPL5 AMFRSEC61B AMFRSOD1 AMFRSRPRB AMFRSYVN1 AMFRTCP1 AMFRTIMM50 AMFRTMUB1 AMFRTOM1L1 AMFRTRIM28 AMFRUBC AMFRUBE2G2 AMFRUFD1L AMFRUbe2g2 AMFRVCP AMIGO1AMIGO1 AMIGO1AMIGO2 AMIGO1AMIGO3 AMIGO2AMIGO1 AMIGO2AMIGO2 AMIGO2AMIGO3 AMIGO3AMIGO1 AMIGO3AMIGO2 AMIGO3AMIGO3 AMOTAMOTL1 AMOTBAG3 AMOTDLG1 AMOTDYNLL1 AMOTDYNLL2 AMOTFOXK1 AMOTFOXK2 AMOTITCH AMOTLIN7A AMOTLIN7C AMOTLONP2 AMOTMPDZ AMOTMPP5 AMOTMPP7 AMOTNEDD4 AMOTNEDD4L AMOTNF2 AMOTNIN AMOTSCLT1 AMOTUIMC1 AMOTUSP11 AMOTYAP1 AMOTL2AMOTL2 AMOTL2GCC1 AMOTL2KRT20 AMOTL2MAGOHB AMPHAP2B1 AMPHBIN1 AMPHCABIN1 AMPHCDK5R1 AMPHCLTC AMPHDNM1 AMPHFBP1 AMPHITSN1 AMPHJUN AMPHPLD1 AMPHPLD2 AMPHREPS1 AMPHREPS2 AMPHSGIP1 AMPHSH3GL2 AMPHSYNJ1 AMPHSYNM AMPHTP73 AMPHTXNL4B AMPHVTN AMPHXRCC4 AMY1AAKAP8 ANAPC1ANAPC11 ANAPC1ANAPC2 ANAPC1ANAPC4 ANAPC1ANAPC5 ANAPC1ANAPC7 ANAPC1CCNB1 ANAPC1CDC16 ANAPC1CDC23 ANAPC1CDC27 ANAPC1FZR1 ANAPC1PTTG1 ANAPC10CCNB1 ANAPC10PTTG1 ANAPC10SMAD2 ANAPC10SMAD3 ANAPC11ANAPC10 ANAPC11ANAPC2 ANAPC11CCNB1 ANAPC11CUL5 ANAPC11PTTG1 ANAPC11UBC ANAPC11UBE2L1 ANAPC13CCNB1 ANAPC13PTTG1 ANAPC16CCNB1 ANAPC16PTTG1 ANAPC2ANAPC11 ANAPC2ANAPC4 ANAPC2ANAPC5 ANAPC2BUB1B ANAPC2CCNB1 ANAPC2CDC20 ANAPC2CREBBP ANAPC2EP300 ANAPC2EPHA4 ANAPC2GRIA1 ANAPC2MAD2L1 ANAPC2PTTG1 ANAPC2UBE2C ANAPC4ANAPC1 ANAPC4ANAPC10 ANAPC4ANAPC11 ANAPC4ANAPC5 ANAPC4ANAPC7 ANAPC4APC2 ANAPC4BUB1B ANAPC4BUB3 ANAPC4C11orf51 ANAPC4CCNB1 ANAPC4CDC16 ANAPC4CDC20 ANAPC4CDC23 ANAPC4CDC27 ANAPC4FZR1 ANAPC4MAD2L1 ANAPC4PTTG1 ANAPC5ANAPC7 ANAPC5CCNB1 ANAPC5CDC27 ANAPC5FZR1 ANAPC5PABPC1 ANAPC5PTTG1 ANAPC5ZBTB16 ANAPC7CCNB1 ANAPC7CDC20 ANAPC7CREBBP ANAPC7EP300 ANAPC7FZR1 ANAPC7PTTG1 ANGPTL4ACTB ANGPTL7ANGPTL7 ANK1OBSCN ANK1RHAG ANK1TIAM1 ANK1TTN ANK3KCNC1 ANK3SPTBN4 ANK3TIAM1 ANKRA2ABL1 ANKRA2HDAC3 ANKRA2HDAC4 ANKRA2HDAC5 ANKRA2LRP2 ANKRA2MPL ANKRA2PDE3B ANKRA2RFX5 ANKRD1MYPN ANKRD1TTN ANKRD11ANKRD11 ANKRD11HDAC3 ANKRD11NCOA2 ANKRD11NCOA3 ANKRD12HDAC3 ANKRD12TADA3 ANKRD13BRPLP1 ANKRD2HBP1 ANKRD2TCAP ANKRD2YBX1 ANKRD2ZBTB3 ANKRD23MYPN ANKRD23TTN ANKRD24EEF1A1 ANKRD24LRIF1 ANKRD24UNC119 ANKRD32RAD18 ANKRD55ZSCAN1 ANKRD6AXIN2 ANKRD6CSNK1E ANKRD6GSK3B ANKS1AEPHA8 ANKS1BUBC ANKZF1VCP ANP32AHIST1H3A ANP32AMAP1B ANP32ASET ANP32ATAF1A ANP32AXPO1 ANTXR2UBC ANXA1ANXA1 ANXA1ANXA5 ANXA1APBB1 ANXA1C14orf1 ANXA1C1orf123 ANXA1CCT7 ANXA1COPS6 ANXA1CSAD ANXA1FAF1 ANXA1GAPDH ANXA1KLHL23 ANXA1KRT8 ANXA1LRIF1 ANXA1MLL4 ANXA1OTUB1 ANXA1RPA1 ANXA1S100A11 ANXA1SUMO1 ANXA1UBC ANXA1UBE2D1 ANXA1UBE3A ANXA1UNC119 ANXA1XRCC6 ANXA11ALG2 ANXA11PDCD6 ANXA11PLSCR1 ANXA11S100A6 ANXA2APOH ANXA2CTSB ANXA2PLAT ANXA2S100A10 ANXA2STAT6 ANXA2gag ANXA3IGSF21 ANXA3TP53 ANXA3UBR1 ANXA3UNC119 ANXA4NFKB1 ANXA4NMT2 ANXA4SMPD1 ANXA5EED ANXA5FDFT1 ANXA5ITGB5 ANXA6CDC73 ANXA6Rasa1 ANXA6S100A1 ANXA6S100B ANXA7A1BG ANXA7A2M ANXA7ACTB ANXA7ACTL6B ANXA7ADAMTS10 ANXA7ALG2 ANXA7ANGPT2 ANXA7APLP1 ANXA7ATP5B ANXA7ATP6V1A ANXA7ATXN3 ANXA7BAG6 ANXA7C14orf1 ANXA7CCDC90B ANXA7CCT7 ANXA7CDK4 ANXA7CELF3 ANXA7CENPB ANXA7CHGB ANXA7CLEC3B ANXA7COL11A2 ANXA7COL4A2 ANXA7COL4A5 ANXA7COPS6 ANXA7CPNE2 ANXA7CPNE6 ANXA7CPSF3L ANXA7CRMP1 ANXA7CSAD ANXA7CTSB ANXA7DDAH2 ANXA7DMPK ANXA7DOCK7 ANXA7DVL1 ANXA7DYNC1I1 ANXA7EEF1A1 ANXA7EXT2 ANXA7F13A1 ANXA7FAF1 ANXA7FBN3 ANXA7FGB ANXA7FLAD1 ANXA7GAPDH ANXA7GBP2 ANXA7GDF9 ANXA7GNB2 ANXA7GNB5 ANXA7HADHB ANXA7HMGXB3 ANXA7HOXD8 ANXA7INPP5K ANXA7KLHL23 ANXA7LRIF1 ANXA7MED31 ANXA7MLL4 ANXA7MPPED1 ANXA7MSH2 ANXA7NGFR ANXA7NMT2 ANXA7NPRL2 ANXA7OTUB1 ANXA7PAAF1 ANXA7PDHB ANXA7PKM2 ANXA7PLD3 ANXA7PSMB10 ANXA7QARS ANXA7RBBP4 ANXA7RBM48 ANXA7RPA1 ANXA7RPL13 ANXA7RPS2 ANXA7SDF4 ANXA7SEMA5B ANXA7SETDB1 ANXA7SMPD1 ANXA7SP110 ANXA7SRI ANXA7SUMO3 ANXA7TAF5L ANXA7TIAM2 ANXA7TLE1 ANXA7TMEM108 ANXA7TMSB4X ANXA7TP53 ANXA7TRMT2A ANXA7TUBA1A ANXA7TUBB2B ANXA7TUBB3 ANXA7UBE2D1 ANXA7UNC119 ANXA7USP4 ANXA7VIM ANXA7WDR18 ANXA7WDR73 ANXA7ZBTB16 ANXA7ZNF135 ANXA7ZNF431 ANXA9NEDD4 ANXA9UBC AP1B1AMPH AP1B1AP1G1 AP1B1AP1M1 AP1B1AP2M1 AP1B1ARF1 AP1B1KIF13A AP1G1AP1B1 AP1G1AP1M1 AP1G1AP1M2 AP1G1AP1S1 AP1G1AP2M1 AP1G1AP2S1 AP1G1ARF1 AP1G1CLTC AP1G1JUN AP1G1NECAP1 AP1G1NECAP2 AP1G1RABEP1 AP1G1SYNRG AP1G1SYP AP1G1gag AP1G2NEDD4 AP1G2SYNRG AP1M1FXR2 AP1M1LDOC1 AP1M1RUNDC3A AP1M1TIFA AP1M1ZBTB8A AP1M2EHD2 AP1M2SCNN1A AP1M2SCNN1B AP1M2SCNN1G AP1S1AP1G1 AP1S1AP1G2 AP1S1ARMC6 AP1S1EBLN2 AP1S1RAB10 AP1S1SEC61A1 AP1S1SLC16A1 AP1S2AP1G1 AP1S2AP1G2 AP2A1RAB11FIP2 AP2A2AMPH AP2A2DAB2 AP2B1AP1M1 AP2B1AP1M2 AP2B1AP2M1 AP2B1ARRB2 AP2B1ATP6V1G1 AP2B1BUB1B AP2B1DHX58 AP2B1FAM46C AP2B1KIAA0408 AP2B1LDLRAP1 AP2B1MEA1 AP2B1MLH1 AP2B1NECAP2 AP2B1NUP54 AP2B1POM121 AP2B1RIBC2 AP2B1TERF2IP AP2B1THAP1 AP2B1TUBGCP4 AP2M1ADRA1B AP2M1AQP4 AP2M1CD22 AP2M1CLEC4M AP2M1CTLA4 AP2M1DPPA2 AP2M1DVL2 AP2M1EHD2 AP2M1FXR2 AP2M1IKZF1 AP2M1MED4 AP2M1RTDR1 AP2M1RUNDC3A AP2M1TBC1D5 AP2M1UBC AP2M1ZBTB8A AP2S1KHK AP2S1POLQ AP3B1ARF5 AP3B1ARF6 AP3S1IRS1 AP3S2AP3B1 AP3S2AP3D1 AP3S2AP3M1 AP3S2ARF1 AP3S2ARF6 AP4B1AP4E1 AP4B1AP4M1 AP4E1AP4B1 AP4E1AP4S1 AP4M1AP4B1 AP4M1AP4E1 APAF1APIP APAF1BCL2L1 APAF1CASP4 APAF1CASP8 APAF1CASP9 APAF1HSP90AA1 APAF1HSPA4 APAF1NLRP1 APBA1APP APBA1CASK APBA1CCS APBA2APP APBA2CLSTN1 APBA2NECAB3 APBA2RELA APBB1ABI1 APBB1APBB1 APBB1APLP1 APBB1APLP2 APBB1APP APBB1CCDC97 APBB1CHERP APBB1CPSF6 APBB1CPSF7 APBB1CYFIP1 APBB1CYFIP2 APBB1DDX17 APBB1DDX3X APBB1DDX46 APBB1DHX15 APBB1DHX9 APBB1DIAPH1 APBB1DIAPH2 APBB1ENAH APBB1EVL APBB1HDAC1 APBB1HNRNPH1 APBB1HNRNPK APBB1HTATSF1 APBB1KAT5 APBB1KHDRBS1 APBB1KHSRP APBB1LRP1 APBB1NEDD4L APBB1NEDD8 APBB1NONO APBB1Nedd4l APBB1PABPC1 APBB1PQBP1 APBB1PTBP1 APBB1RBM17 APBB1RPL4 APBB1SET APBB1SF1 APBB1SF3A1 APBB1SF3A2 APBB1SF3A3 APBB1SF3B1 APBB1SF3B2 APBB1SF3B3 APBB1SF3B4 APBB1SFPQ APBB1TFCP2 APBB1THRAP3 APBB1TSHZ3 APBB1U2AF2 APBB1VASP APBB1WAS APBB1WASF2 APBB1WASL APBB1WBP11 APBB1WIPF1 APBB1WIPF2 APBB1YBX1 APBB1YLPM1 APBB1YWHAG APBB2APP APBB3APLP1 APBB3APLP2 APBB3APP APCACTN1 APCAGFG1 APCANKRD17 APCANXA7 APCAP2B1 APCAPC APCAXIN1 APCC4A APCCGNL1 APCCOG4 APCCOG5 APCCREBBP APCCSNK2A1 APCCSNK2B APCCTBP1 APCCTNNA1 APCCTNNB1 APCCYTH2 APCDLG3 APCDLGAP1 APCDST APCEPAS1 APCERBB2IP APCEXPH5 APCFAM214A APCFBXO30 APCFHOD1 APCFLNA APCGIGYF2 APCGOLGA2 APCHGS APCHNRNPM APCHSPA5 APCING5 APCJUP APCKIAA1328 APCKIF5B APCKIFAP3 APCKRT13 APCKRT14 APCKRT15 APCKRT17 APCKRT19 APCKRT23 APCKRT5 APCLAMA3 APCLAMA4 APCLPHN1 APCMACF1 APCMAPRE1 APCMAPRE2 APCMBD5 APCMCM3AP APCMUC1 APCMYH10 APCMYH11 APCMYO6 APCNAV1 APCNAV2 APCNAV3 APCNCKAP5 APCNCKAP5L APCND4 APCNEB APCNOSTRIN APCNUP153 APCNUP214 APCNUP54 APCNUP98 APCNUPL1 APCNUPL2 APCPNISR APCPOM121 APCPOM121C APCPPP1R13B APCPPP2R5A APCPSMD1 APCPSMD4 APCRANBP2 APCRANBP9 APCRBM4B APCRPS27 APCSEC31A APCSETDB1 APCSIAH1 APCSMC3 APCSNRNP200 APCSPECC1L APCSPTBN1 APCSPTBN2 APCSYNE1 APCTAF1 APCTFAP2A APCTPR APCTRIM21 APCTUBA4A APCUBC APCXPO1 APCZFP106 APCZRANB1 APC11UBE2D2 APC2ACTA1 APC2ANAPC1 APC2ANAPC10 APC2ANAPC11 APC2ANAPC4 APC2ANAPC5 APC2ANAPC7 APC2APC2 APC2CDC16 APC2CDC23 APC2CDC26 APC2CDC27 APC2CDH1 APC2CTNNB1 APC2UBC APCSAPCS APCSFCGR1A APCSFCGR3A APCSFCGR3B APCSGOT2 APCSHES1 APEHAPEH APEHIST1 APEHUBA5 APEX1ANP32A APEX1HIF1A APEX1HOXC13 APEX1MDM2 APEX1POLR3D APEX1SET APEX1TCF21 APEX1XRCC1 APEX1XRCC5 APEX2EFEMP2 APEX2HOOK2 APEX2PCNA APH1ANCSTN APH1APSEN1 APH1APSEN2 APH1APSENEN APIPAPAF1 APIPAPIP APIPLNX1 APIPNUDT18 APIPVPS25 APITD1APITD1 APITD1BLM APITD1C17orf70 APITD1C19orf40 APITD1FANCA APITD1FANCB APITD1FANCF APITD1FANCG APITD1FANCL APITD1FANCM APITD1RMI1 APITD1RMI2 APITD1STRA13 APITD1TOP3A APLFPARP1 APLP1DAB1 APLP1UTP14A APLP2BAG6 APLP2UBC APOA1ABCA1 APOA1APOA1 APOA1APOC1 APOA1LCAT APOA1PDE1A APOA1PLTP APOA1SAA2 APOA1BPAPOA1 APOA2PLTP APOBBGN APOBCALCR APOBCANX APOBHSP90B1 APOBLIPC APOBLRP6 APOBMTTP APOBPDIA4 APOBPPIB APOBUBC APOBEC1APOBEC1 APOBEC1BAG4 APOBEC1CELF2 APOBEC1KPNA2 APOBEC1SYNCRIP APOBEC2APOBEC1 APOBEC3GAPOBEC3G APOBEC3GPRKACA APOBEC3GPTN APOBEC3GUBC APOBEC3Ggag APOBEC3Gvif APOC1HMP19 APOC2LPL APODAPOA2 APODAPOD APOELRP1 APOELRP2 APOELRP8 APOEMAPT APOENEFM APOEPLTP APOESet APOEUBC APOFAPOA1 APOFAPOA2 APOHLRP2 APOHLRP8 APOL1APOA1 APPACHE APPAPBA1 APPAPBA2 APPAPBA3 APPAPBB1 APPAPPBP2 APPApbb1 APPBGN APPCAV1 APPCLSTN1 APPCOL25A1 APPFBLN1 APPGSK3B APPHSD17B10 APPKAT5 APPNAE1 APPNEDD8 APPSHC1 APPSNCA APPSNCB APPSTUB1 APPSYVN1 APPUBC APPUBQLN1 APPYWHAG APPBP2CHMP5 APPBP2EID3 APPBP2KIF6 APPBP2MFSD3 APPBP2MUL1 APPBP2RRS1 APPBP2SYT11 APPBP2TBL3 APPBP2WDR24 APPBP2WNT5B APPBP2ZCCHC12 APPL1AKT2 APPL1APPL2 APPL1DCC APPL1HDAC1 APPL1HDAC2 APPL1MTA2 APPL1RBBP4 APPL1RBBP7 APPL1RUVBL2 APPL2MTA2 APPL2RAB22A APPL2RBBP7 APPL2RUVBL2 APTXPARP1 APTXTP53 APTXXRCC1 AQP1CCDC85B AQP1EFEMP2 AQP1KCTD17 AQP1KRTAP4-12 AQP1MDFI AQP1TRIP6 AQP2UBC
Answered Same DayApr 23, 2021

Answer To: Write a script which can calculate the degree and clustering coefficient for every node (protein) in...

Pushpendra answered on Apr 26 2021
154 Votes
import pandas as pd
import numpy as np
import networkx as nx
df=pd.read_csv("human-ppi-f3nmocg5.t
xt")
df=pd.DataFrame(np.array(df))
data_list=[]
for i in range(df.shape[0]):
data=df.iloc[i][0].split('\t')
data_list.append(data)
nodes=[]
for i in range(len(data_list)):
if(nodes.count(data_list[i][0])==0):
nodes.append(data_list[i][0])
if(nodes.count(data_list[i][1])==0):
nodes.append(data_list[i][1])
edges={}
for i in range(len(nodes)):
edges[nodes[i]]=[]
for i in range(len(data_list)):
...
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