.Using Stirling’s approximation, we found an approximation for
#A, the number of alignments. Apply that formula to n = m = 1000. Why
didn’t we simply compute _
2000
1000
_
exactly on our computer?
.If we use a gap penalty g(k) = −10k, we observe that all optimal
alignments of strings A and B are identical for all values of the mismatch
penalty μ when μ > 20. Explain why this is true.
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