. Using Stirling’s approximation, we found an approximation for #A, the number of alignments. Apply that formula to n = m = 1000. Why didn’t we simply compute _ 2000 1000 _ exactly on our computer?  ...



.
Using Stirling’s approximation, we found an approximation for


#A, the number of alignments. Apply that formula to n = m = 1000. Why


didn’t we simply compute _


2000


1000


_


exactly on our computer?






.
If we use a gap penalty g(k) = −10k, we observe that all optimal


alignments of strings A and B are identical for all values of the mismatch


penalty μ when μ > 20. Explain why this is true.






May 22, 2022
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