. The nucleotide diversity Πn among a set of n aligned sequences was introduced in Section 13.8.2. It is defined by where dij is the number of segregating sites between sequences i and j. (This is the...



.
The nucleotide diversity Πn among a set of n aligned sequences


was introduced in Section 13.8.2. It is defined by


where dij is the number of segregating sites between sequences i and j. (This is


the Hamming distance between the sequences.) Show that under the infinitely


many sites model of mutation, the expected value of the nucleotide diversity


is θ.






.
In Section 13.8.3 we found a formula for ETMRCA for a sample of


n genes. Calculate the variance of TMRCA and find its value for large samples.






May 22, 2022
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