LAS1L FKBP4 RBM6 UPF1 SLC25A5 DHX33 ELAC2 CCDC124 RPS20 CSDE1 AKAP8L UTP18 PTBP1 DCN MATR3 SAMD4A AQR STRAP SEC63 BCLAF1 TFB1M GRN ZCCHC8 NSUN2 SKIV2L2 STAU2 CTNNA1 YTHDC2 POLR2B TPR MAP4 NOP16...

Please find details forAssignment 5


(Total of 3 data files includingprotein-list1


,protein-list2


andHuman-PPI file


+ PDF with details about the assignment itself). The first file (PDF) details the question/s. As always I am expecting the scripts to be submitted so that when they are run with these files in the current directory with their names as such I have the desired output from your script/program.


LAS1L FKBP4 RBM6 UPF1 SLC25A5 DHX33 ELAC2 CCDC124 RPS20 CSDE1 AKAP8L UTP18 PTBP1 DCN MATR3 SAMD4A AQR STRAP SEC63 BCLAF1 TFB1M GRN ZCCHC8 NSUN2 SKIV2L2 STAU2 CTNNA1 YTHDC2 POLR2B TPR MAP4 NOP16 FAM120A R3HDM1 PTCD2 RRP12 MRTO4 THRAP3 NOP58 USP36 MLL3 PUM2 MRPL43 ZFR RC3H2 ZC3H11A PARP12 ALDH18A1 CSDA CCAR1 GNL3L FMR1 FRAXA UBA1 CSTF2 MECP2 PHF6 RBM10 GSPT2 SLC25A5 EIF1AX NKRF RPS4X RBMX2 HTATSF1 LAS1L MBNL3 HUWE1 RPL10 RPL15 RBMX NONO RPGR UPF3B RBM3 HNRNPH2 UTP14A DKC1 MEX3C DDX3X FLNA FAM120C Assignment 1 Assignment 5 • Write a script which can calculate the degree and clustering coefficient for every node (protein) in the human protein interaction network (attached). Now calculate the average clustering coefficient of the network. Finally, test whether the network has a scale-free structure by plotting the degree distribution ? • Now write another script which can calculate the shortest path lengths between every pair of nodes (proteins) in the attached files (two files are attached). Compare the path length distributions between the two protein sets using a wilcox test.