I have started on my assignment but I have gotten stuck. I need my python script "pipeline.py" to takethe barcode sequences in the last columnin"harrington_clinical_data.txt" and match it to every...




I have started on my assignment but I have gotten stuck. I need my python script "pipeline.py" to takethe barcode sequences in the last columnin"harrington_clinical_data.txt" and match it to every gene sequenced in hawkins_pooled_sequences.fastq. The matches then need to be transferred to individual files named "barcode.fastq." So in total there should be 50 files named after the 50 different barcodes each containing only their corresponding genes. The script Ihave been working on can create the files, but it takes forever to run and it transfers the entire sequence into each fastq file it creates. It also makes a file titled "Barcode.fastq" which Idon't want. Any help would be greatly appreciated!!


NameColorBarcode AbbeyBlackGCAGA AdelaideOrangeCTTGA AlanaBlackAGCTA ArabellaBlackTTGAG AriannaOrangeTCCGC BobbyBlackCCCAC BraydenBlackGCAGT BridgetOrangeCGGTT BruceOrangeACGGA ByronOrangeAGCGA CaliOrangeTTTTT CamillaOrangeACAGG CaseBlackGGGAT CasonBlackAACTG DamienBlackTGCAA DaniaBlackCATCC DereonOrangeACACT DestineyOrangeCCGTG DominikBlackGGATT GabrielleOrangeCGAAG GiancarloOrangeTATGG GretaBlackCCAAC IsraelOrangeCCTTT JavionOrangeTAGCT JaylenBlackTCCGG JazlynYellowAGTGA JordynBlackCCACC JordynaYellowCATAT JoshuaBlackTACGT JustusBlackGTTCA KamdenOrangeCCGTA KarleeYellowGTCGT KaylaYellowCATAA KeatonGreenGCTAA KianGreenGGAAG KirstenBlackTGTGA LibbyYellowAGTCA LoreleiOrangeGCGGA MarielaYellowCGGAG MartinGreenCAATT MckaylaGreenAGAGT MckenzieBlackGAAAA NataliaGreenGATTC SantiagoOrangeTGTAT SaraiBlackCTAGT SerenaGreenGGTAA ShelbyYellowAAATG SiennaGreenGACCT TerryOrangeAACCC TristianBlackTGACG
Mar 04, 2023
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