For your final project, using materials from previous weeks, you need to create an ontology in Protégé.The ontology needs to be medical in nature. For examples, an ontology of chronic diseases or an...

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For your final project, using materials from previous weeks, you need to create an ontology in Protégé.The ontology needs to be medical in nature. For examples, an ontology of chronic diseases or an ontology on biomedical imaging. You will need to submit a 12 slide PowerPoint Presentation on your ontology (not including the title or reference slides), as well as additionalscreenshots/.PDF of your ontology from Protégé if needed.



Your presentation should include:



  • An introduction and background to your ontology.

  • A discussion on:

    • Why ontologies are important in healthcare

    • What ontologies are used for in healthcare

    • Your ontology created in Protégé.

      • your classes in the ontology and how you came up with them

      • your main topics in the ontology and how you came up with them

      • your object properties and their domains and ranges in the ontology and how you came up with them

      • your property characteristics in the ontology and how you came up with them

      • Where your ontology could be applied



    • Conclusion

      • A reflection on using Protégé and creating an ontology



    • Bibliography

      • Three additional sources used







The ontology in Protégé needs to include at least:



  • Five top classes/main categories (example: pizza, pizza_base, pizza_topping)

  • Ten main topics/class hierarchy (example: pizza_base <- thick_crust,="" thin_crust,="">

  • List of object properties and their domains and ranges (example: has_base)

  • Add property characteristics

  • Create closure axiom

  • Add definitions for the defined classes


You also need to include at least 75 words of speaker notes per slide below each slide. Make sure to cite all references in APA format. Please review the rubric for further grading items. This is an individual project. No group work will be accepted.











Rubric





Some Rubric


























































Some Rubric

CriteriaRatingsPts




This criterion is linked to a Learning Outcome

Name/Font/Formatting




















5pts

Excellent

Includes the student’s name, uses fonts and formatting consistently throughout the report. Paper looks professional









3pts

Good

Includes the student’s name, uses fonts and formatting consistently throughout the report









2pts

Acceptable

Uses different fonts and multiple font sizes or does not include the student’s name/heading









0pts

Unacceptable

N/A







5pts






This criterion is linked to a Learning Outcome

Presentation Length


















5pts

Excellent

Meets the slide requirement.









0pts

Unacceptable

Does not meet the slide requirement.







5pts






This criterion is linked to a Learning Outcome

Introduction




















10pts

Excellent

Presents a detailed background to what the paper is about.









6pts

Good

Minimally discusses what the paper is about.









4pts

Acceptable

Introduction does not relate to the paper.









0pts

Unacceptable

Paper is lacking a suitable introduction to the paper







10pts






This criterion is linked to a Learning Outcome

Ontology Criteria




















100pts

Excellent

Presents a detail summary on what the ontology is about, its background, why its needed, and how and where it can be used.









60pts

Good

Presents a summary on what the ontology is about, why it’s needed, and how and where it can be used.









40pts

Acceptable

Discussion is short and lacks details of the ontology criteria.









0pts

Unacceptable

Does not include a summary on the ontology criteria







100pts






This criterion is linked to a Learning Outcome

Ontology in Protégé
• Five top classes/main categories
• Ten main topics/class hierarchy
• List of object properties and their domains and ranges
• Property characteristics
• Create closure axiom
• Definitions for the defined classes



















200pts

Excellent

Includes all 6 components completed









120pts

Good

Includes 5 of the 6 components completed









80pts

Acceptable

Includes 4 of the 6 components completed









0pts

Unacceptable

Includes 3 or less components completed







200pts






This criterion is linked to a Learning Outcome

Discussion
• All components are discussed from the instructions
• Reflection on ontology creation and Protege



















60pts

Excellent

Discussions components are discussed in detail









36pts

Good

One component is missing or lacks detail









24pts

Acceptable

Two components are missing or lack detail









0pts

Unacceptable

Three or more components are missing or lack detail







60pts






This criterion is linked to a Learning Outcome

Bibliography




















10pts

Excellent

Includes a bibliography and in-text citations that are formatted properly. Three additional sources are cited in APA format.









6pts

Good

Includes a bibliography formatted properly and two additional sources are cited.









4pts

Acceptable

Includes a bibliography and in-text citations but 1-3 formatting errors are present









0pts

Unacceptable

Includes a bibliography and in-text citations but 4 f formatting errors are present







10pts






This criterion is linked to a Learning Outcome

Flow/Clarity of Speaker Notes




















10pts

Excellent

Has no grammatical/spelling formatting errors. The text goes from general ideas to specific conclusions. Writing is crisp, clear, and succinct. Content is relevant.









6pts

Good

Has minor grammatical/spelling/reference formatting errors. There is a basic flow from one slide to the next. Writing is generally clear but unnecessary words are used. Meaning is sometimes hidden. Content is not clear.









4pts

Acceptable

Has major grammatical/spelling errors. References are not formatted properly. Hard to know what the author is trying to express.









0pts

Unacceptable

Has major grammatical/spelling errors. References are not included. The presentation appears to have no direction.







10pts



Total Points:400




Answered 5 days AfterOct 28, 2022

Answer To: For your final project, using materials from previous weeks, you need to create an ontology in...

Dr Insiyah R. answered on Nov 01 2022
54 Votes
Ontology in healthcare
Name:
Course:
Introduction : What is Ontology
An ontology is a formalised description of knowledge that details the concepts and relationships between them in a particular domain.
To enable such a description, components such as individuals (instances of objects), classes, attributes, relations, requirements, rules, and axioms must be formally specified (Bolt et al,2020).
As a result, ontologies not only provide a
reusable and transferable representation of information, but they may also potentially enrich preexisting domain knowledge (Dos Reis et al,2015).
Large-scale ontologies in fields like biomedicine may now be developed collaboratively by a diverse group of distant users thanks to tools like collaborative Protégé, which provide structured logs of updates to the ontology (Bolt et al,2020).
A solution to the problem of evaluating the outcomes of cooperative ontology engineering endeavours is urgently needed, both practically and theoretically.
Management and quality assurance professionals must have a firm grasp on the state of ontologies generated via collaborative efforts. By better understanding these processes, makers of tools may create solutions that are a better suited for collaborative ontology construction (Dos Reis et al,2015).
Why ontologies are important in healthcare
Interoperability across different healthcare systems is one of the biggest challenges in the healthcare industry.
Communication between different parts of healthcare systems is boosted by ontology.
When compared to fields like finance, where ontology is more developed, the timing of interactions between systems is worse here.
Information systems may be made stronger and more compatible with one another with the use of ontology.
They also help with a healthcare procedure that involves reusing, sending, and exchanging the patient's personal data. Ontology is mostly used in the medical field to represent and organise or reorganise medicinal vocabularies. If the issues with medical terminology are to be resolved, ontology must be an integral element of the solution. In contrast to more developed nations, Albania either has extremely little or no understanding in the field of ontology at all.
Ontology created in Protégé
When the ontology data model is applied to a set of facts, a knowledge graph is produced. This structure is a network of entities, with types represented by nodes and edges representing relationships between them.
By outlining the structure of knowledge in a domain, an ontology makes it possible for a data model to gather data in that area (Dos Reis et al,2015).
The ontology editor and framework known as Protégé was created by Stanford University and is available for free and open source use. It is intended to be used in the construction of intelligent systems (Dos Reis et al,2015). Build knowledge-based solutions in fields as varied as biomedicine, e-commerce, and organisational modelling with the help of Protégé, which is used by a large community of users from academic institutions, government agencies, and private companies. Protégé is sponsored by this community (Groß, Pruski, and Rahm, 2016).
Ontology integration
Integrating ontologies correctly requires the creation of bridge modules that accurately reflect a shared interpretation of the semantic relations between the various ontology pieces (Dos Reis et al,2015).
Scientists need this in order to quickly compare, align, and utilise data from several streams of empirical research.
Even if the ontologies and annotations (data) are maintained separate, ontology-based assimilation does not affect the way academics in different domains conduct their research or impose any undesirable theoretical or methodological perspectives on them.
When information is annotated using a unified ontology, we get ontology-based integration (Turner and Laird,2012).
Predictions made by experts about the years ahead. Researchers who are responsible for producing primary data should keep annotating data with the use of existing ontologies and submitting it to shared repositories. They should also continue to use ontology-based integration, in which upper- and mid-level ontologies, as well as information standards, are standardised via the creation of syntactic or semantic bridging modules (Gómez, Sanz, and Hernández, 2008).
Using cognitive ontologies in practise
An ontology is a notational framework for representing the...
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