. For A = CAAACGTCT and B = AGGCTAAA, perform overlap alignment as in Computational Example 8.1 (by hand) using +2 for match, −1 for mismatch, and −2 for every indel letter. Show the matrix and all...

.
For A = CAAACGTCT and B = AGGCTAAA, perform overlap alignment

as in Computational Example 8.1 (by hand) using +2 for match, −1

for mismatch, and −2 for every indel letter. Show the matrix and all optimal

overlap alignments.

.
Show by example that comparison of read r and r complemented

(r∗) versus read s includes all of the four possible comparisons of r and r∗

with s and s∗.