.Consider a tree with just two leaves. Suppose the branch to
species 1 has length t1 and the branch to species 2 has length t2. Show that
for a reversible mutation model, the probability Fij of observing base i in
species 1 and base j in species 2 depends on t1 and t2 only through the
sum t1 + t2. This result is known as the pulley principle, which says that
we cannot tell the direction of time. (For the meaning of “pulley principle,”
imagine that two leaves are connected by a rope through a pulley mounted
at the node immediately above it. If you lengthen the rope on one side of the
pulley, the rope length on the other side must correspondingly shorten.)
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